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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Jonathan Kober | 12th | Jimmy Williams | 7th | 7th |
| First Basemen | Noel Cusack | 15th | Zach Weakley | 13th | 14th |
| Second Basemen | Dusty Ward | 2nd | Jonathan Raley | 20th | 19th |
| Third Basemen | Jason Clare | 22nd | Kyle Nash | 13th | 16th |
| Shortstops | Adam Bechdel | 16th | Justin Ottinger | Tied for 3rd | 6th |
| Left Fielders | Willie Villegas | 16th | Steve Nalbach | 13th | 14th |
| Center Fielders | Rich Tangorra | 20th | Galtero Casale | 20th | 19th |
| Right Fielders | Michael Nava | 22nd | Michael Nava | 12th | 14th |
| Starting Pitchers | James Dobyns | 9th | 24th | 24th | |
| Relievers | Jesus Henriguez | 18th | Jesus Henriguez | 9th | 12th |
| Closers | Scott Hargraves | 23rd | Gabe Sprung | 16th | 23rd |
