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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | John Werlin | 2nd | Ben Everly | 1st | 1st |
| First Basemen | Juan Ortiz | 5th | George Kinder | 4th | 5th |
| Second Basemen | Dusty Anderson | 10th | Jason Lewis | 2nd | 8th |
| Third Basemen | Ryan Forsythe | 3rd | Matt Dean | 20th | 16th |
| Shortstops | Charlie Paquin | 6th | Dan Canady | 11th | 8th |
| Left Fielders | Nelson Ziersch | 1st | Nick Cordova | 3rd | 1st |
| Center Fielders | Nick Wisniewski | 12th | Isaiah Goulbourne | Tied for 7th | 10th |
| Right Fielders | Ernesto Ramirez | 2nd | Jason Perrigin | 3rd | 1st |
| Starting Pitchers | Andy Weatherholt | 4th | Dustin Patton | 2nd | 4th |
| Relievers | Shane Kidd | 5th | Jeremy Ferraro | 4th | 3rd |
| Closers | Shane Kidd | 8th | Gregg Daugherty | 6th | 5th |
