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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Joe Carroll | 20th | Jim Kaufman | 1st | Tied for 15th |
| First Basemen | Juan Ortega | 7th | Steve Howard | 16th | 8th |
| Second Basemen | 24th | Russell D'Alessandro | 10th | 24th | |
| Third Basemen | Mike Townsend | 12th | Jose Balli | 22nd | 14th |
| Shortstops | Mario Aguiluz | 20th | Raul Rodriguez | 1st | 13th |
| Left Fielders | Chris Quinton | 14th | Corey Pope | 22nd | 17th |
| Center Fielders | Isaiah Mill | 13th | Alfonso Estrada | 9th | 12th |
| Right Fielders | Chris Epstein | 18th | Collin Mays | 20th | 17th |
| Starting Pitchers | Juan Fernandez | 18th | Brian Gay | 3rd | 13th |
| Relievers | Scott Lewis | 12th | Jeremy Sufka | 7th | 11th |
| Closers | Scott Lewis | 24th | Matt Schmidt | 12th | 17th |
