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| Position | Top player | Team ranking | Top prospect | Organizational ranking | Overall ranking |
|---|---|---|---|---|---|
| Catchers | Jason Perez | 47th | Tied for 1st | 47th | |
| First Basemen | Jonathan Swander | Tied for 41st | Tied for 1st | Tied for 41st | |
| Second Basemen | Nelson Archuleta | 14th | Tied for 1st | 14th | |
| Third Basemen | Jason Stubbs | 60th | Tied for 1st | 60th | |
| Shortstops | David MacAdam | 10th | Tied for 1st | 10th | |
| Left Fielders | Kevin McDowell | 21st | Tied for 1st | 21st | |
| Center Fielders | Bill Chavez | 45th | Tied for 1st | 45th | |
| Right Fielders | B.J. Linderman | Tied for 34th | Tied for 1st | Tied for 34th | |
| Starting Pitchers | Jonathan Sites | 25th | Tied for 1st | 25th | |
| Relievers | Brian Dail | 5th | Tied for 1st | 5th | |
| Closers | Chris Bramley | 9th | Tied for 1st | 9th |
